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Table 1 Primer pairs used for quantification of mRNA expression by qPCR and expected amplicon lengths

From: Aspartate-β-hydroxylase and hypoxia marker expression in head and neck carcinomas: implications for HPV-associated tumors

Gene

Name

 

Sequence 5´-3´

Product length (bp)

ASPH

Aspartate β-hydroxylase

F

TGGTGATTCCCAAGGAAGGC

110

R

CTGCCATACCTCGTGCTCAA

HIF1A

Hypoxia inducible factor 1, subunit alpha

F

ACCCATTCCTCACCCATCAAA

134

R

GTTCTTCTGGCTCATATCCCATC

SLC2A1

Solute carrier family 2, member 1

F

TGGCTACAACACTGGAGTCATC

128

R

CTGAGAGGGACCAGAGCGTG

P4HA1

Prolyl 4-hydroxylase, subunit alpha 1

F

AGTACATGACCCTGAGACTGGA

84

R

GGATTTTCATAGCCAGAGAGCC

VEGFA

Vascular endothelial growth factor A

F

GCTGTCTTGGGTGCATTGG

69

R

GCAGCCTGGGACCACTTG

EPAS1

Endothelial PAS domain protein 1

F

TCAAAGGGCCACAGCGACAA

131

R

CCAGCTCATAGAACACCTCCGT

GUSB

Glucuronidase beta

(reference gene)

F

GAAAATATGTGGTTGGAGAGCTCATT

101

R

CCGAGTGAAGATCCCCTTTTTA

ACTB

Actin beta

(reference gene)

F

CCACGAAACTACCTTCAACTCCA

132

R

GTGATCTCCTTCTGCATCCTGTC

  1. F - forward primer, R - reverse primer